I said preventing the flags from appearing - so that I'll be able to use the beacons for teleport, if I just wanted to remove the flags I wouldn't mention the teleportation, infect, I wouldn't ask anything at all, I know how to remove units.

Anyway, seeing as there's no way around this, is there anything else that I can use to teleport on the whole map? Scanner sweeps can't be centered with a location and they reveal an area, and disruption web obviously has a too small range...
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Maybe you could create a new flag beacon when the flags appear. Like kill the present and create a new one. If the flags appear again preserve the trigger.